5YDW
Full-length structure of HypT from Salmonella typhimuriuma (hypochlorite-specific LysR-type transcriptional regulator)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9999 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 87.606, 114.556, 128.117 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.674 - 3.300 |
R-factor | 0.2536 |
Rwork | 0.251 |
R-free | 0.29770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ydo |
RMSD bond length | 0.003 |
RMSD bond angle | 0.546 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.360 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.166 | 0.443 |
Rpim | 0.061 | 0.244 |
Number of reflections | 9592 | 460 |
<I/σ(I)> | 8.3 | 2.33 |
Completeness [%] | 95.0 | 95.8 |
Redundancy | 6.7 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 287 | 0.1M sodium acetate, 0.1M MES (pH 6.5), 30%(v/v) PEG400, 2mM TCEP |