5YD7
Crystal Structure OF VIM-2 Metallo-beta-lactamase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AichiSR BEAMLINE BL2S1 |
| Synchrotron site | AichiSR |
| Beamline | BL2S1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-08-18 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 1.12 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 100.800, 79.270, 67.390 |
| Unit cell angles | 90.00, 130.15, 90.00 |
Refinement procedure
| Resolution | 55.250 - 1.700 |
| R-factor | 0.16525 |
| Rwork | 0.163 |
| R-free | 0.21309 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4nq2 |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.424 |
| Data reduction software | iMOSFLM |
| Data scaling software | SCALA |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 55.250 | 1.790 |
| High resolution limit [Å] | 1.700 | 1.700 |
| Rmerge | 0.069 | 0.324 |
| Number of reflections | 44283 | 6436 |
| <I/σ(I)> | 18 | |
| Completeness [%] | 99.4 | 99.3 |
| Redundancy | 6.9 | 7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M Magnesium formate dehydrate, 25% PEG 3350 |
