5YD2
Crystal Structure of Delta 4 mutant of EhPSAT (Phosphoserine aminotransferase of Entamoeba histolytica)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 77.15 |
Detector technology | IMAGE PLATE |
Collection date | 2016-10-25 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 132.238, 67.904, 95.030 |
Unit cell angles | 90.00, 110.93, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.350 |
R-factor | 0.23196 |
Rwork | 0.229 |
R-free | 0.28695 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yb0 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.548 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | DM |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.390 |
High resolution limit [Å] | 2.350 | 6.370 | 2.350 |
Rmerge | 0.055 | 0.030 | 0.421 |
Rmeas | 0.060 | 0.033 | 0.489 |
Rpim | 0.023 | 0.013 | 0.243 |
Number of reflections | 31390 | 1725 | 1125 |
<I/σ(I)> | 20.6 | ||
Completeness [%] | 95.0 | 99.9 | 68.5 |
Redundancy | 6.1 | 6.6 | 3.2 |
CC(1/2) | 0.999 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | 20% PEG2000MME 100 mM Tris pH-8.5 200 mM TMAO |