5YCJ
Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-26 |
Detector | RAYONIX MX225-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.200, 69.120, 108.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.973 - 1.580 |
R-factor | 0.1535 |
Rwork | 0.152 |
R-free | 0.18340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ycj |
RMSD bond length | 0.014 |
RMSD bond angle | 1.453 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 1.670 |
High resolution limit [Å] | 1.580 | 1.580 |
Rmerge | 0.071 | 0.112 |
Number of reflections | 41217 | 5908 |
<I/σ(I)> | 29.4 | 25.3 |
Completeness [%] | 99.9 | 100 |
Redundancy | 12.3 | 10.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 291 | 0.1 M MIB buffer (25 mM sodium malonate dibasic monohydrate, 37.5 mM boric acid, 37.5 mM imidazole pH 9.0), 25 % (w/v) PEG1500, 2% (w/v) aMbWb' |