Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YBO

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with preaustinoid A1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL17A
Synchrotron siteNSRRC
BeamlineBL17A
Temperature [K]95
Detector technologyPIXEL
Collection date2016-11-12
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.98
Spacegroup nameP 62
Unit cell lengths171.816, 171.816, 45.665
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.655 - 2.204
R-factor0.2152
Rwork0.213
R-free0.26220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ybm
RMSD bond length0.008
RMSD bond angle0.938
Data scaling softwareAimless
Phasing softwarePHENIX ((1.10.1_2155))
Refinement softwarePHENIX ((1.10.1_2155))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.0002.300
High resolution limit [Å]2.2002.200
Number of reflections39248
<I/σ(I)>17.5
Completeness [%]99.6
Redundancy3.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293PEG 3350, lithium citrate

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon