5Y9R
Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-29 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.120, 57.430, 62.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.595 - 2.200 |
R-factor | 0.2036 |
Rwork | 0.202 |
R-free | 0.23840 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.770 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.600 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.063 | 0.410 |
Rmeas | 0.079 | 0.520 |
Rpim | 0.047 | 0.310 |
Number of reflections | 9675 | 821 |
<I/σ(I)> | 12.8 | 3.5 |
Completeness [%] | 98.8 | 99.3 |
Redundancy | 4.9 | 4.9 |
CC(1/2) | 0.997 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 4.5 | 299 | 0.1M sodium acetate trihydrate, 24% PEG 2000, 10mM magnesium chloride, 10mM nickel chloride, 10mM cadmium chloride |