Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XN8

Structure of glycerol dehydrogenase crystallised as a contaminant

Replaces:  5WQ5
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2014-01-28
DetectorMARRESEARCH
Wavelength(s)1.54
Spacegroup nameP 4
Unit cell lengths178.550, 178.550, 80.090
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.460 - 2.330
R-factor0.23676
Rwork0.236
R-free0.25146
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4mca
RMSD bond length0.008
RMSD bond angle1.198
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]56.4602.390
High resolution limit [Å]2.3302.330
Rmerge0.2000.370
Number of reflections964874048
<I/σ(I)>8.07
Completeness [%]89.351.9
Redundancy6.81.3
CC(1/2)0.9800.640
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7.52950.1 M HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid), pH 7.5, 0.02 M magnesium chloride hexahydrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon