5XK3
Crystal structure of apo form Isosesquilavandulyl Diphosphate Synthase from Streptomyces sp. strain CNH-189
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL15A1 |
Synchrotron site | NSRRC |
Beamline | BL15A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-30 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.115, 121.198, 126.527 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.278 - 1.996 |
R-factor | 0.1697 |
Rwork | 0.169 |
R-free | 0.19990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vfw |
RMSD bond length | 0.006 |
RMSD bond angle | 0.825 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BALBES |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.070 |
High resolution limit [Å] | 1.996 | 1.996 |
Rmerge | 0.051 | 0.518 |
Number of reflections | 71134 | 6984 |
<I/σ(I)> | 22.8 | 2.9 |
Completeness [%] | 99.2 | 98.8 |
Redundancy | 4.2 | 3.9 |
CC(1/2) | 0.996 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | PROTEIN: 10 mg/mL in 25 mM Tris-Cl (pH 7.5), 150 mM NaCl RESERVOIR: 0.2 M (NH4)2SO4, 0.1 M MES pH 6.5, 30% PEG 5000MME |