5XJ6

Crystal structure of PlsY (YgiH), an integral membrane glycerol 3-phosphate acyltransferase - the glycerol 3-phosphate form

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	NFPSS BEAMLINE BL19U1
Synchrotron site	NFPSS
Beamline	BL19U1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2016-09-09
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.97853
Spacegroup name	P 2 21 21
Unit cell lengths	42.148, 53.772, 87.688
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.840 - 2.370
R-factor	0.221
Rwork	0.219
R-free	0.26290
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.003
RMSD bond angle	0.626
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER
Refinement software	PHENIX ((1.11.1_2575))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	45.840	2.460
High resolution limit [Å]	2.370	2.370
Rmerge	0.099	1.145
Rpim	0.060	0.382
Number of reflections	8548
<I/σ(I)>	11.9	1.7
Completeness [%]	98.9	89.9
Redundancy	12.4	9.7

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	LIPIDIC CUBIC PHASE	8	293	35-38% PEG 400, 0.1-0.2M LiCl, 0.1M Tris HCl pH 8.0, 80mM glycerol phosphate