5XE9
Crystal Structure of the Complex of the Peptidase Domain of Streptococcus mutans ComA with a Small Molecule Inhibitor.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-28 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.785, 59.764, 122.589 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.575 - 3.101 |
R-factor | 0.2484 |
Rwork | 0.246 |
R-free | 0.28480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k8u |
RMSD bond length | 0.015 |
RMSD bond angle | 1.702 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX ((1.10.1_2155)) |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.210 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.177 | |
Number of reflections | 6568 | |
<I/σ(I)> | 26.8 | 17.5 |
Completeness [%] | 95.6 | 99 |
Redundancy | 6.3 | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 295 | 100mM ammonium sulfate, 50mM bis-tris, 12.5%(w/v) polyethylene glycol 3,350. |