5XBC
Crystal Structure Basis for PEDV nsp1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-01-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97917 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.709, 75.053, 37.363 |
Unit cell angles | 90.00, 89.96, 90.00 |
Refinement procedure
Resolution | 26.477 - 1.249 |
R-factor | 0.1719 |
Rwork | 0.171 |
R-free | 0.19300 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.991 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.530 | 50.000 | 1.290 |
High resolution limit [Å] | 1.250 | 2.690 | 1.250 |
Rmerge | 0.050 | 0.033 | 0.436 |
Rmeas | 0.057 | 0.038 | 0.509 |
Rpim | 0.029 | 0.018 | 0.258 |
Number of reflections | 52517 | ||
<I/σ(I)> | 13.9 | ||
Completeness [%] | 99.3 | 96.2 | 99.2 |
Redundancy | 3.9 | 4 | 3.8 |
CC(1/2) | 0.998 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M Lithium sulfate monohydrate, 0.1 M Sodium citrate tribasic dihydrate pH 5.5, 18% w/v Polyethylene glycol 1,000 |