Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XAK

Crystal structure (form II) of thymidylate kinase from Thermus thermophilus HB8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM14
Synchrotron siteESRF
BeamlineBM14
Temperature [K]100
Detector technologyCCD
Collection date2013-09-25
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9737
Spacegroup nameP 21 21 21
Unit cell lengths46.160, 47.090, 150.940
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.160 - 1.500
R-factor0.14529
Rwork0.143
R-free0.18870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2pbr
RMSD bond length0.015
RMSD bond angle1.728
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.1601.530
High resolution limit [Å]1.5001.500
Rmerge0.097
Number of reflections53700
<I/σ(I)>10.6
Completeness [%]99.9
Redundancy7.6
CC(1/2)0.998
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH295CsCl2.H2O, 30% PEG 3500

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon