5X2J
Crystal structure of a recombinant hybrid manganese superoxide dismutase from Staphylococcus equorum and Staphylococcus saprophyticus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 57.362, 57.362, 105.762 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.210 - 1.400 |
R-factor | 0.144 |
Rwork | 0.142 |
R-free | 0.18530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2rcv |
RMSD bond length | 0.019 |
RMSD bond angle | 1.789 |
Data reduction software | HKL |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.420 |
High resolution limit [Å] | 1.400 | 3.800 | 1.400 |
Rmerge | 0.072 | 0.047 | 0.478 |
Rmeas | 0.076 | 0.050 | 0.506 |
Rpim | 0.025 | 0.016 | 0.162 |
Number of reflections | 40473 | ||
<I/σ(I)> | 4.4 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 9.6 | 9.6 | 9.5 |
CC(1/2) | 0.998 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | Magnesium chloride, HEPES, PEG3350 |