5X20
The ternary structure of D-mandelate dehydrogenase with NADH and anilino(oxo)acetate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-26 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 96.300, 111.950, 108.940 |
Unit cell angles | 90.00, 96.65, 90.00 |
Refinement procedure
Resolution | 29.820 - 2.400 |
R-factor | 0.18588 |
Rwork | 0.184 |
R-free | 0.21831 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wfi |
RMSD bond length | 0.015 |
RMSD bond angle | 1.759 |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.980 | 2.530 |
High resolution limit [Å] | 2.400 | 2.400 |
Number of reflections | 89403 | 12887 |
<I/σ(I)> | 8.7 | 2.5 |
Completeness [%] | 99.6 | 98.7 |
Redundancy | 3.6 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 278 | 0.1 M cacodylate-Na (pH 5.0), 0.17 M ammonium sulfate, 22.5% PEG 8000 |