5X1U
Structure of the cytosolic domain of DotM derived from Legionella pneumophila
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9796 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.529, 72.021, 65.691 |
Unit cell angles | 90.00, 102.15, 90.00 |
Refinement procedure
Resolution | 40.736 - 1.800 |
R-factor | 0.1764 |
Rwork | 0.176 |
R-free | 0.19830 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 0.829 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.880 | 1.800 |
Rmerge | 0.079 | 0.077 | 0.179 |
Rmeas | 0.088 | 0.084 | 0.213 |
Rpim | 0.036 | 0.032 | 0.111 |
Total number of observations | 169586 | ||
Number of reflections | 70306 | ||
<I/σ(I)> | 9.1 | ||
Completeness [%] | 91.0 | 99.4 | 72 |
Redundancy | 4.3 | 6.2 | 2.6 |
CC(1/2) | 0.996 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 100mM Tris-HCl (pH8.5), 17%(v/v) PEG3350, 200mM MgCl2 |