5WJE
Crystal structure of Naa80 bound to a bisubstrate analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03319 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.136, 64.370, 68.589 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.294 - 1.765 |
R-factor | 0.1809 |
Rwork | 0.177 |
R-free | 0.21750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wjd |
RMSD bond length | 0.002 |
RMSD bond angle | 0.641 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.294 | 50.000 | 1.800 |
High resolution limit [Å] | 1.765 | 4.800 | 1.765 |
Rmerge | 0.130 | 0.065 | 0.869 |
Rmeas | 0.137 | 0.068 | 0.945 |
Rpim | 0.041 | 0.021 | 0.360 |
Number of reflections | 16748 | 1558 | |
<I/σ(I)> | 4.7 | ||
Completeness [%] | 99.0 | 99.9 | 80.5 |
Redundancy | 10.5 | 10 | 6.4 |
CC(1/2) | 0.998 | 0.675 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 24% polyethylene glycol (PEG) 3350, 0.1 M Bis Tris propane (pH 7.6, pH adjusted with citric acid) and 10 mM NaBr |