5WI3
Structure of Acinetobacter baumannii carbapenemase OXA-239 K82D bound to cefotaxime
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-13 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.07814 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 98.095, 143.032, 44.312 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 80.900 - 1.810 |
R-factor | 0.18115 |
Rwork | 0.180 |
R-free | 0.20458 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k0x |
RMSD bond length | 0.014 |
RMSD bond angle | 1.653 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.100 | 1.817 |
High resolution limit [Å] | 1.810 | 1.811 |
Rmerge | 0.084 | 0.949 |
Rpim | 0.046 | 0.505 |
Number of reflections | 57689 | 542 |
<I/σ(I)> | 13.1 | 2.1 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 7.8 | 8.2 |
CC(1/2) | 0.998 | 0.873 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 298 | 100 mM NaH2PO4, 100 mM citric acid, 200 mM NaCl, 20% PEG 8000, pH 4.2 |