5WAB
Crystal Structure of Bifidobacterium adolescentis GH3 beta-glucosidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU ULTRAX 18 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-12-05 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 94.610, 96.430, 106.770 |
Unit cell angles | 87.76, 89.11, 61.00 |
Refinement procedure
Resolution | 44.511 - 2.450 |
R-factor | 0.1969 |
Rwork | 0.195 |
R-free | 0.23400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2x40 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.674 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.400 | 2.538 |
High resolution limit [Å] | 2.450 | 2.450 |
Rmerge | 0.118 | 0.594 |
Rpim | 0.118 | 0.594 |
Number of reflections | 103722 | 8470 |
<I/σ(I)> | 10.5 | 1.9 |
Completeness [%] | 85.5 | 69.65 |
Redundancy | 4 | 3.6 |
CC(1/2) | 0.630 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | 0.1 M HEPES pH 8.5, 0.2 M sodium chloride, 29% PEG 3350, 3% glycerol |