5W7Z
Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.2.1 |
| Synchrotron site | ALS |
| Beamline | 8.2.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-05-03 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 1.000000 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 76.520, 86.910, 79.510 |
| Unit cell angles | 90.00, 115.39, 90.00 |
Refinement procedure
| Resolution | 36.275 - 1.700 |
| R-factor | 0.1645 |
| Rwork | 0.164 |
| R-free | 0.18590 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PDN entry: 4tszA |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.830 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | MoRDa |
| Refinement software | PHENIX (1.12rc1_2807) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 36.275 | 50.000 | 1.740 |
| High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
| Rmerge | 0.044 | 0.020 | 0.564 |
| Rmeas | 0.052 | 0.024 | 0.683 |
| Number of reflections | 102967 | 1186 | 7580 |
| <I/σ(I)> | 17.29 | 45.5 | 2.12 |
| Completeness [%] | 99.5 | 97.1 | 99.4 |
| Redundancy | 3.4 | 3.296 | 3.105 |
| CC(1/2) | 0.999 | 0.999 | 0.760 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Rigaku Reagents Precipitant Synergy Screen 2, condition e8:2.01 %v/v MPD, 13.4%w/v PEG 8000, 100 mM Imidazole/Hydrochloric acid pH 6.5: RicoA.17987.a.B1.PW38227 at 20 mg/ml, cryo 20% EG, tray 290986e8, puck sgk8-4 |






