5VTP
X-ray diffraction data of DNA Polymerase Eta (RAD30) of Saccharomyces cerevisiae with a single magnesium bound in absence of DNA and incoming dNTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-18 |
Detector | NOIR-1 |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 130.681, 130.681, 93.908 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.370 - 2.800 |
R-factor | 0.2223 |
Rwork | 0.221 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jih |
RMSD bond length | 0.003 |
RMSD bond angle | 0.619 |
Data reduction software | XDS (November 1, 2016) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.587 | 56.587 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.047 | 1.024 | |
Rmeas | 0.105 | 0.051 | 1.126 |
Rpim | 0.032 | 0.016 | 0.343 |
Total number of observations | 245725 | ||
Number of reflections | 23171 | ||
<I/σ(I)> | 18.8 | 11.4 | 0.8 |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 10.6 | 9.8 | 10.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291.15 | 20% v/v Glycerin (Additive), 14.4% w/v PEG 8000 (Precipitant), 0.08 M NaCac 6.5 pH (Buffer), 0.16 M Ca(OAc)2 (Salt) |