Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VTP

X-ray diffraction data of DNA Polymerase Eta (RAD30) of Saccharomyces cerevisiae with a single magnesium bound in absence of DNA and incoming dNTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCCD
Collection date2017-04-18
DetectorNOIR-1
Wavelength(s)1.0
Spacegroup nameP 31 2 1
Unit cell lengths130.681, 130.681, 93.908
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.370 - 2.800
R-factor0.2223
Rwork0.221
R-free0.24900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jih
RMSD bond length0.003
RMSD bond angle0.619
Data reduction softwareXDS (November 1, 2016)
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]56.58756.5872.950
High resolution limit [Å]2.8008.8502.800
Rmerge0.0471.024
Rmeas0.1050.0511.126
Rpim0.0320.0160.343
Total number of observations245725
Number of reflections23171
<I/σ(I)>18.811.40.8
Completeness [%]100.099.3100
Redundancy10.69.810.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5291.1520% v/v Glycerin (Additive), 14.4% w/v PEG 8000 (Precipitant), 0.08 M NaCac 6.5 pH (Buffer), 0.16 M Ca(OAc)2 (Salt)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon