5VQA
Structure of human TRIP13, ATP-bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-19 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | P 65 |
Unit cell lengths | 98.479, 98.479, 120.979 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.339 - 2.540 |
R-factor | 0.1993 |
Rwork | 0.197 |
R-free | 0.24080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xgu |
RMSD bond length | 0.007 |
RMSD bond angle | 0.986 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 121.030 | 2.660 |
High resolution limit [Å] | 2.540 | 2.540 |
Rmerge | 0.093 | 1.767 |
Rpim | 0.043 | 0.821 |
Number of reflections | 22993 | 2231 |
<I/σ(I)> | 16.4 | 0.9 |
Completeness [%] | 97.9 | 83.1 |
Redundancy | 5.7 | 5.3 |
CC(1/2) | 0.999 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.1 M Tris-HCl pH 8.5, 0.2 M KCl, 10% pentaerythritol propoxylate, 5 mM MgCl2, 1 mM ATP, cryoprotected with 10% glycerol and 12% additional pentaerythritol propoxylate |