5VMM
Staphylococcus aureus IsdB bound to human hemoglobin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 140.815, 209.114, 70.431 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.794 - 3.600 |
R-factor | 0.2556 |
Rwork | 0.252 |
R-free | 0.30230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dn1 3rtl 4ij2 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.679 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.660 |
High resolution limit [Å] | 3.600 | 9.750 | 3.600 |
Rmerge | 0.116 | 0.041 | 0.891 |
Rmeas | 0.127 | 0.045 | 0.974 |
Rpim | 0.051 | 0.019 | 0.391 |
Number of reflections | 46535 | ||
<I/σ(I)> | 6.6 | ||
Completeness [%] | 99.8 | 98.7 | 100 |
Redundancy | 6 | 5.5 | 6 |
CC(1/2) | 0.998 | 0.654 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 0.1 M malonic acid pH 5.5, 2.2 M ammonium sulfate |