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5VML

Crystal Structure of Acetoacetyl-CoA Reductase from Burkholderia Pseudomallei 1710b with bound NADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2017-03-02
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 42 21 2
Unit cell lengths66.310, 66.310, 115.260
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.888 - 1.700
R-factor0.1461
Rwork0.144
R-free0.17090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ezl
RMSD bond length0.005
RMSD bond angle0.772
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX ((dev_2744))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.740
High resolution limit [Å]1.7001.700
Rmerge0.0620.458
Number of reflections289091965
<I/σ(I)>22.03
Completeness [%]99.593.2
Redundancy8.94.3
CC(1/2)0.9990.856
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5290BupsA.00010.e.A1.PS00061 at 19.3 mg/ml incubated with 4 mM NADP, mixed 1:1 with Morpheus(c8): 12.5% (w/v) PEG-1000, 12.5% (w/v) PEG-3350, 12.5% (v/v) MPD, 0.1 M MOPS/ HEPES-Na, pH = 7.5, 0.03 M each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate, crystals were soaked for 24 hours with 5 mM NADP in well solution, harvested directly

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PDB entries from 2024-05-15

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