5VML
Crystal Structure of Acetoacetyl-CoA Reductase from Burkholderia Pseudomallei 1710b with bound NADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-02 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 66.310, 66.310, 115.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.888 - 1.700 |
R-factor | 0.1461 |
Rwork | 0.144 |
R-free | 0.17090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ezl |
RMSD bond length | 0.005 |
RMSD bond angle | 0.772 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX ((dev_2744)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.740 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.062 | 0.458 |
Number of reflections | 28909 | 1965 |
<I/σ(I)> | 22.03 | |
Completeness [%] | 99.5 | 93.2 |
Redundancy | 8.9 | 4.3 |
CC(1/2) | 0.999 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | BupsA.00010.e.A1.PS00061 at 19.3 mg/ml incubated with 4 mM NADP, mixed 1:1 with Morpheus(c8): 12.5% (w/v) PEG-1000, 12.5% (w/v) PEG-3350, 12.5% (v/v) MPD, 0.1 M MOPS/ HEPES-Na, pH = 7.5, 0.03 M each sodium nitrate, disodium hydrogen phosphate, ammonium sulfate, crystals were soaked for 24 hours with 5 mM NADP in well solution, harvested directly |