5VKY
Yeast Tda2 (YER071C) - a dynein light chain family member that works independently of the dynein motor complex and microtubules.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2014-07-13 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 50.390, 161.259, 33.258 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.315 - 2.300 |
R-factor | 0.2143 |
Rwork | 0.212 |
R-free | 0.26540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.869 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.750 | 53.750 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.035 | 0.019 | 0.195 |
Rmeas | 0.038 | 0.021 | 0.212 |
Rpim | 0.015 | 0.009 | 0.083 |
Number of reflections | 12771 | 269 | 1241 |
<I/σ(I)> | 32.9 | 60.3 | 8.4 |
Completeness [%] | 100.0 | 97.7 | 100 |
Redundancy | 6.8 | 5.3 | 6.4 |
CC(1/2) | 1.000 | 0.999 | 0.986 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5 | 289 | 1.6 M ammonium sulfate, 50 mM Bis-Tris, pH 5, 15% xylitol |