5VJ0
Crystal Structure of heme-containing DyP Type Peroxidase from Enterobacter lignolyticus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.870, 74.160, 118.640 |
Unit cell angles | 90.00, 108.17, 90.00 |
Refinement procedure
Resolution | 43.449 - 1.930 |
R-factor | 0.1733 |
Rwork | 0.173 |
R-free | 0.20100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5de0 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.847 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.449 | 43.449 | 1.980 |
High resolution limit [Å] | 1.930 | 8.630 | 1.930 |
Rmerge | 0.071 | 0.032 | 0.608 |
Rmeas | 0.077 | 0.035 | 0.651 |
Total number of observations | 716348 | ||
Number of reflections | 92368 | 1115 | 6739 |
<I/σ(I)> | 19.45 | 53.1 | 3.83 |
Completeness [%] | 98.0 | 98.3 | 96.9 |
Redundancy | 7.755 | 7.114 | 7.838 |
CC(1/2) | 0.999 | 0.998 | 0.918 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 293 | 0.1M HEPES, pH 7.3, 25% (v/v) PEG-3350 |