5VH5
Crystal Structure of Fc fragment of anti-TNFa antibody infliximab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-22 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 50.160, 148.030, 75.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.264 - 1.750 |
R-factor | 0.1923 |
Rwork | 0.190 |
R-free | 0.22820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4cdh |
RMSD bond length | 0.007 |
RMSD bond angle | 0.856 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2229) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.264 | 33.264 | 1.800 |
High resolution limit [Å] | 1.750 | 7.830 | 1.750 |
Rmerge | 0.055 | 0.039 | 0.544 |
Rmeas | 0.060 | 0.044 | 0.595 |
Number of reflections | 28936 | 336 | 2117 |
<I/σ(I)> | 17.54 | 31.78 | 3.32 |
Completeness [%] | 99.8 | 88.9 | 100 |
Redundancy | 5.985 | 4.494 | 6.145 |
CC(1/2) | 0.999 | 0.997 | 0.866 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | JCSG+ E7 (266855e7): 10% propanol-2, 200mM zinc acetate, 100mM sodium cacodylate pH6.5: protein conc. 10mg/mL: cryo 20% ethylene glycol: puckID sxt1-8 |