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5VH5

Crystal Structure of Fc fragment of anti-TNFa antibody infliximab

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2015-10-22
DetectorRAYONIX MX-225
Wavelength(s)0.97872
Spacegroup nameC 2 2 21
Unit cell lengths50.160, 148.030, 75.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution33.264 - 1.750
R-factor0.1923
Rwork0.190
R-free0.22820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4cdh
RMSD bond length0.007
RMSD bond angle0.856
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2229)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]33.26433.2641.800
High resolution limit [Å]1.7507.8301.750
Rmerge0.0550.0390.544
Rmeas0.0600.0440.595
Number of reflections289363362117
<I/σ(I)>17.5431.783.32
Completeness [%]99.888.9100
Redundancy5.9854.4946.145
CC(1/2)0.9990.9970.866
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP289JCSG+ E7 (266855e7): 10% propanol-2, 200mM zinc acetate, 100mM sodium cacodylate pH6.5: protein conc. 10mg/mL: cryo 20% ethylene glycol: puckID sxt1-8

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PDB entries from 2024-05-15

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