5VFF
Synaptotagmin 1 C2B domain, lead-bound (low occupancy)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2016-05-10 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.634, 41.117, 82.854 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.483 - 1.413 |
R-factor | 0.1577 |
Rwork | 0.155 |
R-free | 0.19100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1uow |
RMSD bond length | 0.006 |
RMSD bond angle | 0.887 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.430 | 1.490 |
High resolution limit [Å] | 1.410 | 1.410 |
Rpim | 0.023 | 0.266 |
Number of reflections | 27034 | 3733 |
<I/σ(I)> | 22.7 | 2.9 |
Completeness [%] | 99.0 | 95.9 |
Redundancy | 6.6 | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.2 M sodium fluoride, 20% PEG 3350 |