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5VEV

Crystal Structure of Phosphoribosylamine-glycine Ligase from Neisseria gonorrhoeae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2017-03-22
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths73.310, 99.450, 131.600
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.515 - 1.900
R-factor0.1667
Rwork0.166
R-free0.20060
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3mjf
RMSD bond length0.006
RMSD bond angle0.826
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.51546.5151.950
High resolution limit [Å]1.9008.5001.900
Rmerge0.0550.0290.516
Rmeas0.0610.0320.562
Number of reflections748748855400
<I/σ(I)>19.2344.573.68
Completeness [%]97.889.297.2
Redundancy6.2835.5686.382
CC(1/2)0.9990.9990.887
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.52901:1 15 mg/mL NegoA.00865.a.B1.PW37919 / JCSG+(d4) (30% w/v PEG8000, 0.1 M sodium acetate/acetic acid, pH 4.5, 0.2 M lithium sulfate), cryoprotectant: 20% ethylene glycol

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PDB entries from 2024-05-15

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