5VDA
Crystal structure of human WEE1 kinase domain in complex with RAC-IV-101, a MK1775 analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-12-08 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.360, 44.640, 64.620 |
Unit cell angles | 90.00, 102.18, 90.00 |
Refinement procedure
Resolution | 63.164 - 2.100 |
Rwork | 0.191 |
R-free | 0.25540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.598 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.164 | 63.164 | 2.150 |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.043 | 0.019 | 0.264 |
Rmeas | 0.051 | 0.023 | 0.311 |
Total number of observations | 60253 | ||
Number of reflections | 16522 | 190 | 1214 |
<I/σ(I)> | 20.66 | 58.16 | 5.08 |
Completeness [%] | 99.4 | 90.5 | 100 |
Redundancy | 3.647 | 3.168 | 3.604 |
CC(1/2) | 0.999 | 0.999 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 291 | 5.0 MG/ML WEE1, 25 mM Na/K phosphate, 1 mM DTT, 0.05 M ammonium sulfate, 0.05 M Bis-tris (pH 5.5), 7.5 % PEG 3350, 1 mM RAC-IV-101 |