5VCI
RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 99 |
Detector technology | CCD |
Collection date | 2016-10-28 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1 |
Spacegroup name | H 3 |
Unit cell lengths | 69.612, 69.612, 70.853 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.910 - 2.600 |
R-factor | 0.16487 |
Rwork | 0.162 |
R-free | 0.21232 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fnj |
RMSD bond length | 0.010 |
RMSD bond angle | 1.787 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.054 | 0.526 |
Number of reflections | 3864 | 338 |
<I/σ(I)> | 18.45 | 1.81 |
Completeness [%] | 97.8 | 87.8 |
Redundancy | 3.2 | 2.4 |
CC(1/2) | 0.944 | 0.523 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 50 mM MgCl2, 0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 7.0, 25% w/v Polyethylene glycol 3,350 |