5V95
Structure of the H477R variant of rat cytosolic PEPCK in complex with manganese.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-07-31 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.152, 118.199, 61.470 |
Unit cell angles | 90.00, 111.35, 90.00 |
Refinement procedure
Resolution | 59.100 - 2.300 |
R-factor | 0.2178 |
Rwork | 0.215 |
R-free | 0.26140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qew |
RMSD bond length | 0.006 |
RMSD bond angle | 1.120 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.960 | 2.300 |
Rmerge | 0.126 | 0.048 | 0.889 |
Rmeas | 0.136 | 0.051 | 0.961 |
Rpim | 0.050 | 0.019 | 0.361 |
Total number of observations | 196632 | ||
Number of reflections | 27441 | ||
<I/σ(I)> | 10.2 | ||
Completeness [%] | 99.9 | 99.6 | 99.9 |
Redundancy | 7.2 | 7.5 | 6.9 |
CC(1/2) | 0.999 | 0.863 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 298 | 24 - 34% PEG 3350 and 100mM HEPES, at pH 7.4 |