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5V34

Ethylene forming enzyme in complex with manganese, malic acid and L-arginine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-11
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.1272
Spacegroup nameP 32 2 1
Unit cell lengths87.360, 87.360, 104.300
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.680 - 1.480
R-factor0.1365
Rwork0.135
R-free0.16210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5v2t
RMSD bond length0.010
RMSD bond angle1.029
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.5.31)
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.11.1-2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]61.24061.2401.510
High resolution limit [Å]1.4808.1101.480
Rmerge0.0840.0671.054
Rmeas0.0910.0731.133
Rpim0.0330.0270.409
Number of reflections75179
<I/σ(I)>12.8
Completeness [%]97.999.796.4
Redundancy7.26.87.4
CC(1/2)0.9980.9910.639
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5277.150.2 ul 64 mg/ml EFE (+1 mM manganese chloride, 25 mM HEPES pH 8.0, 1 mM TCEP, +2.5 mM L-arginine) was mixed with 0.2 ul reservoir solution. The sitting drop reservoir of 50 ul contained 25% PEG 1500 and 0.1 M MMT buffer, pH 6.5. The crystal was soaked for about a minute in 25% w/v Polyethylene glycol 400, 75% reservoir solution before freezing it.

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PDB entries from 2024-05-15

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