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5V31

Ethylene forming enzyme in complex with manganese and L-arginine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-11
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.1272
Spacegroup nameP 21 21 21
Unit cell lengths48.630, 81.910, 87.160
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.580 - 2.450
R-factor0.1828
Rwork0.180
R-free0.24680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5v2t
RMSD bond length0.016
RMSD bond angle0.915
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.5.31)
Phasing softwarePHASER (2.7.16)
Refinement softwarePHENIX (1.11.1-2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]87.16087.1602.550
High resolution limit [Å]2.4508.8302.450
Rmerge0.1800.0850.565
Rmeas0.2100.0980.660
Rpim0.1060.0490.334
Total number of observations45124
Number of reflections12891
<I/σ(I)>5.4
Completeness [%]97.391.798
Redundancy3.53.73.6
CC(1/2)0.9720.9840.718
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5277.150.2 ul 64 mg/ml EFE (+4 mM manganese chloride, 25 mM HEPES pH 8.0, 1 mM TCEP, +2.5 mM L-arginine) was mixed with 0.2 ul reservoir solution. The sitting drop reservoir of 50 ul contained 0.1 M HEPES/ Sodium hydroxide pH 7.5, 25% w/v Polyethylene glycol 10,000. The crystal was soaked for about a minute in 25% w/v Polyethylene glycol 400, 75% reservoir solution before freezing it.

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