5V31
Ethylene forming enzyme in complex with manganese and L-arginine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.1272 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.630, 81.910, 87.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.580 - 2.450 |
R-factor | 0.1828 |
Rwork | 0.180 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v2t |
RMSD bond length | 0.016 |
RMSD bond angle | 0.915 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 87.160 | 87.160 | 2.550 |
High resolution limit [Å] | 2.450 | 8.830 | 2.450 |
Rmerge | 0.180 | 0.085 | 0.565 |
Rmeas | 0.210 | 0.098 | 0.660 |
Rpim | 0.106 | 0.049 | 0.334 |
Total number of observations | 45124 | ||
Number of reflections | 12891 | ||
<I/σ(I)> | 5.4 | ||
Completeness [%] | 97.3 | 91.7 | 98 |
Redundancy | 3.5 | 3.7 | 3.6 |
CC(1/2) | 0.972 | 0.984 | 0.718 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277.15 | 0.2 ul 64 mg/ml EFE (+4 mM manganese chloride, 25 mM HEPES pH 8.0, 1 mM TCEP, +2.5 mM L-arginine) was mixed with 0.2 ul reservoir solution. The sitting drop reservoir of 50 ul contained 0.1 M HEPES/ Sodium hydroxide pH 7.5, 25% w/v Polyethylene glycol 10,000. The crystal was soaked for about a minute in 25% w/v Polyethylene glycol 400, 75% reservoir solution before freezing it. |