5V0E
Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (f5I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-20 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 72.776, 72.776, 181.201 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.458 - 2.744 |
R-factor | 0.2073 |
Rwork | 0.204 |
R-free | 0.24670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qea |
RMSD bond length | 0.004 |
RMSD bond angle | 0.532 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1839) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.910 |
High resolution limit [Å] | 2.740 | 2.740 |
Rmerge | 0.060 | 0.571 |
Rmeas | 0.067 | 0.635 |
Number of reflections | 24257 | 3874 |
<I/σ(I)> | 16.19 | 2.33 |
Completeness [%] | 99.5 | 97.6 |
Redundancy | 5.14 | 5.19 |
CC(1/2) | 0.999 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 290 | 100 mM sodium acetate, pH 7.0, 10 mM potassium chloride, 2-4% PEG4000 |