5V0C
Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (f2I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 12.3.1 |
Synchrotron site | ALS |
Beamline | 12.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 71.863, 71.863, 181.825 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.331 - 2.580 |
R-factor | 0.2325 |
Rwork | 0.229 |
R-free | 0.27250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qea |
RMSD bond length | 0.002 |
RMSD bond angle | 0.452 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1839) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.730 |
High resolution limit [Å] | 2.580 | 2.580 |
Rmerge | 0.042 | 0.565 |
Rmeas | 0.049 | 0.662 |
Number of reflections | 28650 | 4605 |
<I/σ(I)> | 19.82 | 2.3 |
Completeness [%] | 99.7 | 99.5 |
Redundancy | 3.74 | 3.74 |
CC(1/2) | 0.877 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 290 | 100 mM sodium acetate, pH 7.0, 10 mM potassium chloride, 2-4% PEG4000 |