5UUY
Crystal structure of Dioclea lasiocarpa lectin (DLL) complexed with X-MAN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-27 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.47 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 64.660, 85.980, 93.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.421 - 1.880 |
R-factor | 0.2267 |
Rwork | 0.225 |
R-free | 0.26220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rs6 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.967 |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.421 | 53.140 | 1.980 |
High resolution limit [Å] | 1.880 | 5.950 | 1.880 |
Rmerge | 0.090 | 0.040 | 0.345 |
Rmeas | 0.100 | 0.086 | 0.044 |
Rpim | 0.041 | 0.034 | 0.018 |
Number of reflections | 21274 | ||
<I/σ(I)> | 9.1 | ||
Completeness [%] | 98.8 | 99.9 | 97.2 |
Redundancy | 5 | 6.1 | 3.1 |
CC(1/2) | 0.994 | 0.998 | 0.792 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES buffer, 10% PEG 8000, 0.16 M calcium acetate |