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5UUS

SrtF sortase from Corynebacterium diphtheriae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2016-12-13
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.9792
Spacegroup nameP 32 2 1
Unit cell lengths69.990, 69.990, 237.292
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.396 - 2.020
R-factor0.1654
Rwork0.164
R-free0.19060
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2w1k
RMSD bond length0.011
RMSD bond angle1.228
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.39642.3962.050
High resolution limit [Å]2.0205.4802.020
Rmerge0.0700.0540.563
Rmeas0.0740.0570.637
Rpim0.0240.0180.288
Number of reflections45279
<I/σ(I)>7.42.11
Completeness [%]99.799.896.9
Redundancy99.24.3
CC(1/2)0.9980.704
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52890.1M Sodium formate; 0.1M Ammonium acetate; 0.1M Sodium citrate tribasic dihydrate; 0.1M Sodium potassium tartrate tetrahydrate; 0.1M Sodium oxamate; 0.1M Tris-BICINE buffer; 12.5% MPD; 12.5% PEG 1000; 12.5% PEG 3350

220113

PDB entries from 2024-05-22

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