5UUS
SrtF sortase from Corynebacterium diphtheriae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-13 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 69.990, 69.990, 237.292 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.396 - 2.020 |
R-factor | 0.1654 |
Rwork | 0.164 |
R-free | 0.19060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w1k |
RMSD bond length | 0.011 |
RMSD bond angle | 1.228 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.396 | 42.396 | 2.050 |
High resolution limit [Å] | 2.020 | 5.480 | 2.020 |
Rmerge | 0.070 | 0.054 | 0.563 |
Rmeas | 0.074 | 0.057 | 0.637 |
Rpim | 0.024 | 0.018 | 0.288 |
Number of reflections | 45279 | ||
<I/σ(I)> | 7.4 | 2.11 | |
Completeness [%] | 99.7 | 99.8 | 96.9 |
Redundancy | 9 | 9.2 | 4.3 |
CC(1/2) | 0.998 | 0.704 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 289 | 0.1M Sodium formate; 0.1M Ammonium acetate; 0.1M Sodium citrate tribasic dihydrate; 0.1M Sodium potassium tartrate tetrahydrate; 0.1M Sodium oxamate; 0.1M Tris-BICINE buffer; 12.5% MPD; 12.5% PEG 1000; 12.5% PEG 3350 |