5UM0
Crystal structure of 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase from Neisseria gonorrhoeae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-30 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.580, 73.030, 96.930 |
Unit cell angles | 90.00, 97.60, 90.00 |
Refinement procedure
Resolution | 42.500 - 1.850 |
R-factor | 0.1669 |
Rwork | 0.166 |
R-free | 0.20860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gp3-A |
RMSD bond length | 0.006 |
RMSD bond angle | 0.774 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2650) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.500 | 42.471 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.065 | 0.044 | 0.356 |
Rmeas | 0.071 | 0.047 | 0.435 |
Number of reflections | 84511 | 1005 | 6213 |
<I/σ(I)> | 14.12 | 32.33 | 2.45 |
Completeness [%] | 99.8 | 98.9 | 99.4 |
Redundancy | 5.116 | 6.854 | 3.074 |
CC(1/2) | 0.998 | 0.997 | 0.870 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | Microlytics MCSG1 screen, condition: E10: 20% ammonium tartrate, 20% PEG 3350: NegoA.01013.a.B1.PS38022 at 14.0mg/ml: cryo: 20% EG: tray: 284241 e10: puck: qsy1-3. |