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5UM0

Crystal structure of 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase from Neisseria gonorrhoeae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-12-30
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths71.580, 73.030, 96.930
Unit cell angles90.00, 97.60, 90.00
Refinement procedure
Resolution42.500 - 1.850
R-factor0.1669
Rwork0.166
R-free0.20860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3gp3-A
RMSD bond length0.006
RMSD bond angle0.774
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2650)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.50042.4711.900
High resolution limit [Å]1.8508.2701.850
Rmerge0.0650.0440.356
Rmeas0.0710.0470.435
Number of reflections8451110056213
<I/σ(I)>14.1232.332.45
Completeness [%]99.898.999.4
Redundancy5.1166.8543.074
CC(1/2)0.9980.9970.870
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5290Microlytics MCSG1 screen, condition: E10: 20% ammonium tartrate, 20% PEG 3350: NegoA.01013.a.B1.PS38022 at 14.0mg/ml: cryo: 20% EG: tray: 284241 e10: puck: qsy1-3.

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PDB entries from 2024-05-15

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