5UIA
Crystal Structure of an Oxidoreductase from Agrobacterium radiobacter in Complex with NAD+, R-2,3-dihydroxyisovalerate and Magnesium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-26 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97931 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 138.411, 113.926, 65.719 |
Unit cell angles | 90.00, 95.10, 90.00 |
Refinement procedure
Resolution | 29.490 - 2.180 |
R-factor | 0.18515 |
Rwork | 0.184 |
R-free | 0.20939 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5uhw |
RMSD bond length | 0.008 |
RMSD bond angle | 1.233 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.29) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.490 | 2.300 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.103 | 1.037 |
Rmeas | 0.143 | 1.444 |
Rpim | 0.099 | 1.002 |
Number of reflections | 49821 | 6897 |
<I/σ(I)> | 8.2 | 2 |
Completeness [%] | 94.3 | 89.4 |
Redundancy | 3.7 | 3.4 |
CC(1/2) | 0.990 | 0.339 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 3.5 M Sodium formate, 5 mM NAD+, 5 mM magnesium chloride |