5UDT
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, in complex with AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9787 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 166.299, 166.299, 124.925 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.185 - 3.188 |
R-factor | 0.2102 |
Rwork | 0.207 |
R-free | 0.27270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5udq |
RMSD bond length | 0.010 |
RMSD bond angle | 1.115 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.185 | 47.180 | 3.340 |
High resolution limit [Å] | 3.188 | 10.570 | 3.190 |
Rmerge | 0.103 | 0.021 | 0.638 |
Number of reflections | 33575 | ||
<I/σ(I)> | 13.3 | ||
Completeness [%] | 99.7 | 97.8 | 99.1 |
Redundancy | 5.3 | 4.6 | 5.3 |
CC(1/2) | 0.997 | 0.999 | 0.764 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 4 ul ~21 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl, 4 mM adenosine triphosphate, 10 mM magnesium chloride) mixed with 2 ul reservoir solution. Hanging drop reservoir contained 100 ul of 28% Tacsimate pH 6.5 |