5UDQ
LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-19 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9787 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 107.401, 107.401, 317.042 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.489 - 2.090 |
R-factor | 0.1888 |
Rwork | 0.187 |
R-free | 0.23100 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.874 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.25) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.030 | 48.030 | 2.120 |
High resolution limit [Å] | 2.090 | 11.430 | 2.090 |
Rmerge | 0.076 | 0.037 | 0.576 |
Number of reflections | 110015 | ||
<I/σ(I)> | 15.6 | ||
Completeness [%] | 99.3 | 86.1 | 94.9 |
Redundancy | 6.3 | 4.8 | 5.4 |
CC(1/2) | 0.997 | 0.995 | 0.702 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 294.15 | 4 ul ~39 mg/ml LarE (100 mM Tris-HCl pH 7.5, 300 mM NaCl) mixed with 4 ul reservoir solution. Hanging drop reservoir contained 100 ul of 37.5% v/v pentaerythritol ethoxylate (15/4 EO/OH), 50 mM BIS-TRIS pH 6.5, 105 mM ammonium sulfate. |