5U75
The structure of Staphylococcal Enterotoxin-like X (SElX), a Unique Superantigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 110 |
Detector technology | IMAGE PLATE |
Collection date | 2013-07-27 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54180 |
Spacegroup name | P 65 |
Unit cell lengths | 92.141, 92.141, 53.418 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 18.000 - 1.660 |
R-factor | 0.1866 |
Rwork | 0.185 |
R-free | 0.21430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dxg |
RMSD bond length | 0.009 |
RMSD bond angle | 1.385 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 18.850 | 18.847 | 1.750 |
High resolution limit [Å] | 1.660 | 5.260 | 1.660 |
Rmerge | 0.151 | 0.032 | 1.942 |
Number of reflections | 28745 | ||
<I/σ(I)> | 5 | 21.9 | 0.4 |
Completeness [%] | 94.4 | 97.7 | 87.6 |
Redundancy | 15.6 | 15.2 | 14.9 |
CC(1/2) | 0.999 | 1.000 | 0.522 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 296 | SEIX (10 mg/ml), SLeX (5 mM), PEG 3350 (24%), Tri-Lithium citrate (250 mM) |