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5U1U

Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist A740003

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2015-04-26
DetectorADSC QUANTUM 315
Wavelength(s)0.9792
Spacegroup nameI 21 3
Unit cell lengths169.566, 169.566, 169.566
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.318 - 3.604
R-factor0.236
Rwork0.233
R-free0.26080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4dw0
RMSD bond length0.003
RMSD bond angle0.661
Data scaling softwareAimless (0.5.1)
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.32045.3203.950
High resolution limit [Å]3.6008.8303.600
Rmerge0.2280.0361.243
Rmeas0.239
Rpim0.072
Total number of observations105166
Number of reflections9537
<I/σ(I)>13
Completeness [%]99.998.899.9
Redundancy1110.411.1
CC(1/2)0.9960.9990.752
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277100 mM HEPES or Tris (pH 6.0-7.5), 100 mM NaCl, 4% ethylene glycol, 15% glycerol, 27-32% PEG-400 or 31-36% PEG-300, 0.1 mg/mL lipid mixture (60% POPE, 20% POPG, and 20% cholesterol), and 1 mM A740003

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PDB entries from 2024-05-15

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