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5TP4

Crystal structure of a hydantoinase/carbamoylase family amidase from Burkholderia ambifaria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2016-08-18
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths42.530, 136.960, 164.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.992 - 1.700
R-factor0.1613
Rwork0.161
R-free0.19130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5i4m
RMSD bond length0.009
RMSD bond angle1.004
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.740
High resolution limit [Å]1.7007.6001.700
Rmerge0.0740.0210.543
Rmeas0.0820.0230.593
Total number of observations639016
Number of reflections10667713567742
<I/σ(I)>17.8746.813.68
Completeness [%]99.898.599.9
CC(1/2)0.9991.0000.885
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290Rigaku Reagents Morpheus screen G2: 10% PEG8000, 20% ethylene glycol, 0.1 M MES/Imidazole pH 6.5, 0.02M sodium formate, 0.02M ammonium acetate, 0.02M trisodium citrate, 0.02M sodium potassium L-tartrate, 0.02M sodium oxamate; BuamA.12245.a.B1.PS37939 at 12.3 mg/ml, tray 274677 g2, puck icb9-10

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PDB entries from 2024-05-15

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