5TLB
Scabin toxin from Streptomyces scabies in complex with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-11 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 86.040, 62.260, 38.080 |
Unit cell angles | 90.00, 100.30, 90.00 |
Refinement procedure
Resolution | 42.340 - 1.700 |
Rwork | 0.159 |
R-free | 0.19610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5daz |
RMSD bond length | 0.006 |
RMSD bond angle | 0.833 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.340 | 42.340 | 1.760 |
High resolution limit [Å] | 1.700 | 3.660 | 1.700 |
Rmerge | 0.052 | 0.027 | 0.765 |
Rpim | 0.031 | 0.016 | 0.461 |
Number of reflections | 21771 | 2233 | 2158 |
<I/σ(I)> | 15.4 | 41.7 | 1.8 |
Completeness [%] | 99.7 | 99.6 | 99.8 |
Redundancy | 3.8 | 3.8 | 3.7 |
CC(1/2) | 0.999 | 0.998 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 294 | 100 mM potassium chloride, 50 mM sodium cacodylate trihydrate, pH 6.0, 16% PEG1000, 0.5 mM spermine |