5TKJ
Structure of vaccine-elicited diverse HIV-1 neutralizing antibody vFP1.01 in complex with HIV-1 fusion peptide residue 512-519
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-ID |
| Synchrotron site | APS |
| Beamline | 22-ID |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-07-10 |
| Detector | RAYONIX MX300-HS |
| Wavelength(s) | 1 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 76.159, 120.182, 226.182 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 43.539 - 2.118 |
| R-factor | 0.2003 |
| Rwork | 0.198 |
| R-free | 0.24060 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3bky |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.007 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 43.539 | 50.000 | 2.160 |
| High resolution limit [Å] | 2.120 | 5.750 | 2.120 |
| Rmerge | 0.093 | 0.046 | 0.517 |
| Rmeas | 0.100 | ||
| Rpim | 0.037 | ||
| Total number of observations | 843512 | ||
| Number of reflections | 118381 | ||
| <I/σ(I)> | 5.4 | ||
| Completeness [%] | 99.8 | 99.8 | 97.1 |
| Redundancy | 7.1 | 7 | 5.4 |
| CC(1/2) | 0.999 | 0.899 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 293 | 0.2M AmSO4, 0.1M NaoAc pH 4.6, 25% PEG 4000 |
