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5TFU

Structure of cytochrome P450 2D6 (CYP2D6) BACE1 inhibitor complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2015-04-11
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9795
Spacegroup nameP 21 21 21
Unit cell lengths57.105, 191.756, 246.838
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.070 - 2.750
R-factor0.2134
Rwork0.211
R-free0.24970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xry
RMSD bond length0.002
RMSD bond angle0.574
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.0702.810
High resolution limit [Å]2.7502.750
Rmerge0.0840.562
Number of reflections71309
<I/σ(I)>12.53.1
Completeness [%]99.296.7
Redundancy4.64.4
CC(1/2)0.9980.916
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298PEG3350, SODIUM ACETATE, SODIUM CACODYLATE, POTASSIUM PHOSPHATE, SODIUM CHLORIDE, ZINC CHLORIDE, GLYCEROL, BETA-MERCAPTOETHANOL, THIORIDAZINE, HEGA-10, FACIAL AMPHIPHILE 231_CHOL. BETA-SECRETASE INHIBITOR WAS ADDED TO THE MOTHER LIQUOR AFTER CRYSTALLIZATION OF THE P450 2D6 THIORDIDAZINE TERNARY COMPLEX.

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PDB entries from 2024-05-15

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