5T7P
Crystal structure of Pisum arvense lectin (PAL) complexed with X-Man
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-06-25 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.46 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 56.770, 62.970, 66.740 |
Unit cell angles | 90.00, 94.27, 90.00 |
Refinement procedure
Resolution | 33.277 - 2.160 |
R-factor | 0.1729 |
Rwork | 0.170 |
R-free | 0.22080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hkd |
RMSD bond length | 0.013 |
RMSD bond angle | 1.456 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.277 | 44.790 | 2.250 |
High resolution limit [Å] | 2.140 | 6.760 | 2.140 |
Rmerge | 0.080 | 0.030 | 0.438 |
Number of reflections | 25363 | ||
<I/σ(I)> | 12.5 | ||
Completeness [%] | 97.2 | 98.7 | 94.8 |
Redundancy | 3.6 | 3.5 | 3.4 |
CC(1/2) | 0.997 | 0.999 | 0.835 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 100 mM HEPES pH 6.8, 20% PEG 8000, 200 mM Magnesium acetate tetrahydrate |