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5T3E

Crystal structure of a nonribosomal peptide synthetase heterocyclization domain.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2015-10-07
DetectorRAYONIX MX-300
Wavelength(s)0.97949
Spacegroup nameC 1 2 1
Unit cell lengths139.693, 124.937, 68.925
Unit cell angles90.00, 95.66, 90.00
Refinement procedure
Resolution39.894 - 2.297
R-factor0.2024
Rwork0.201
R-free0.23710
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4jn3
RMSD bond length0.004
RMSD bond angle0.773
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 Overall
Low resolution limit [Å]39.900
High resolution limit [Å]2.300
Number of reflections52064
<I/σ(I)>15.1
Completeness [%]99.8
Redundancy3.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295BmdB-Cy2 was crystallized by mixing with 0.88% Tween 20, 1.62 M ammonium sulfate, 0.1 M HEPES pH 7.5, 2.67% PEG 400, and 3% 6-aminohexanoic acid, and equilibrated 0.88% Tween 20, 1.62 M ammonium sulfate, 0.1 M HEPES pH 7.5, 2.67% PEG 400, and 3% 6-aminohexanoic acid. Crystals were transferred into a solution of mother liquor plus 20% (v/v) ethylene glycol, and flash-cooled in liquid nitrogen.

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PDB entries from 2024-05-15

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