5SS0
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCn9000000uj1v
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.688, 88.688, 39.383 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.990 - 1.150 |
R-factor | 0.1327 |
Rwork | 0.132 |
R-free | 0.15140 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.990 | 35.990 | 1.220 |
High resolution limit [Å] | 1.150 | 3.440 | 1.150 |
Rmerge | 0.053 | 0.039 | 0.463 |
Rmeas | 0.057 | 0.042 | 0.503 |
Total number of observations | 726077 | ||
Number of reflections | 108551 | 4222 | 17372 |
<I/σ(I)> | 15.1 | 37.82 | 2.9 |
Completeness [%] | 99.8 | 99.7 | 99.4 |
Redundancy | 6.689 | 6.708 | 6.704 |
CC(1/2) | 0.999 | 0.999 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |